NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10057024

Scaffold Ga0315909_10057024


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10057024 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3573
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001165Metagenome / Metatranscriptome760Y
F003687Metagenome / Metatranscriptome473Y
F007026Metagenome359Y
F019817Metagenome227Y
F030408Metagenome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100570241F001165N/AMTTPNTPRIPDSIDIQRLQAMQLVAKMKESAEKHGIGFIGGFISPDGQKFVMTNMEDQDDINALMPEDLK
Ga0315909_100570242F007026N/AMEQAKKYPTIDWTRNEYHQLKLVVDALKAICTREDKRHQMDEHLDPHMRNIVDEVIGMLEDEIDYDPTPNEPGEPPITAAEMHAAAWKEHQEMHS
Ga0315909_100570243F019817N/AMTLTVTPPVGLSINQRNLYTYFLNHNKKYKNAPCYVPRCPGQNSRVEQYLNALIKLEQYGLIRVDRSSANYTGWIMLEPKTGL
Ga0315909_100570246F030408N/AMGLHIALIADRTGRYAHVWGSAPTWSHFHDQLEDAGCEVIEDQTLEWEGCDQDEIAEDCLSVHQLLNDTTFAPH
Ga0315909_100570249F003687GGAMTPKAVEQLLTQDARLLARRDAPVIDTELEEQRQAALELFFQWQDGMREFQDLMPFCVVLQRKVDLNRDLLRWERRHED

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