Scaffold Ga0315909_10057024

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10057024
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3573
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F003687	Metagenome / Metatranscriptome	473	Y
F007026	Metagenome	359	Y
F019817	Metagenome	227	Y
F030408	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_100570241	F001165	N/A	MTTPNTPRIPDSIDIQRLQAMQLVAKMKESAEKHGIGFIGGFISPDGQKFVMTNMEDQDDINALMPEDLK
Ga0315909_100570242	F007026	N/A	MEQAKKYPTIDWTRNEYHQLKLVVDALKAICTREDKRHQMDEHLDPHMRNIVDEVIGMLEDEIDYDPTPNEPGEPPITAAEMHAAAWKEHQEMHS
Ga0315909_100570243	F019817	N/A	MTLTVTPPVGLSINQRNLYTYFLNHNKKYKNAPCYVPRCPGQNSRVEQYLNALIKLEQYGLIRVDRSSANYTGWIMLEPKTGL
Ga0315909_100570246	F030408	N/A	MGLHIALIADRTGRYAHVWGSAPTWSHFHDQLEDAGCEVIEDQTLEWEGCDQDEIAEDCLSVHQLLNDTTFAPH
Ga0315909_100570249	F003687	GGA	MTPKAVEQLLTQDARLLARRDAPVIDTELEEQRQAALELFFQWQDGMREFQDLMPFCVVLQRKVDLNRDLLRWERRHED