Scaffold Ga0315909_10056692

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10056692
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3586
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026822	Metagenome	196	Y
F042747	Metagenome / Metatranscriptome	157	Y
F048091	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1005669215	F026822	AGGTGG	MSEPRYLSGDEYALTGTELDIVKCKECASEYDYAEYHSYTCSDCEDKMIKRERERVNG
Ga0315909_100566927	F048091	N/A	MIEHHFIIKYSKEGGWEWDTDSEELRYPDGTVWNEEAQEWTNGYIGWNKEKDEGEYLDDDDLVGEQLGAILEVANSANKVI
Ga0315909_100566929	F042747	GAGG	MLGYKYEDIQGFGSTLKLAELMAIDMGEAEVREGLLKIWDFFEGLLAEGYVEGEEVEV