Scaffold Ga0315909_10054316

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10054316
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3684
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003601	Metagenome / Metatranscriptome	477	Y
F025487	Metagenome	201	Y
F087064	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1005431611	F003601	AGG	MTDYTDEQLLAMAMANIGEYITDNSPQYILIEDDPRNEDDYDTWDYGTEPLPHDHTWHSTSIDVEVSPSEAD
Ga0315909_100543162	F087064	N/A	MTNKRQYDYVIGDRVAERPKAHGIFAVRNEVKERIQQYRSQRYGTVVGINLKPNKSGAKLKFLLIRWDHLKSPTEHAQMRICPADQLQRLQSEGYGFEVE
Ga0315909_100543168	F025487	GGGGG	MTNDTIDLDLVDKTVELIPEIAWSQVRQTIVTALVDNMPGSVVERLTGSYDDFDQAEKFLLDYYELPQKKCELIIDSFKIMGAFNCLELLNTLNLSTEDGIPESNPS