Scaffold Ga0315909_10050157

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10050157
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3871
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F007111	Metagenome / Metatranscriptome	357	N
F032960	Metagenome / Metatranscriptome	178	N
F055669	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_100501571	F055669	N/A	MSVTLIAYPLNDSNAEVPYVLDTMGEIDIALTFSVEDIADITKRRGSFSKTITLPNTPTNRACFGYAYNIQS
Ga0315909_100501572	F032960	N/A	MATTVLSGSPLVATPVYNKMIFKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPSTNYGFFDVAKVVETLITPTKPSLTQTGFVDHAGYYSGYRLDFMEEYGNTPVVQTGTVTTLSGNVSFAGNLEQLELATWSGGLYFPSGAIVNETTRMLTTPTTRTVYADGYGWLSIGQFNYAVEKAYIQYWSATGATFARQFDVLASSVSGSNVIRFGVGPMNLKALTSGQCLDGNPGDYLFQGNAGDFYDVYFSRGANITIRQRYVIGQCQRFNSIPVHFQNKYGGIDSYTFTLKNRKRANISRQTFGYNSDVYATTTYDKVWAGEFDYVYALNSDWLTDAESAWLIEMVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
Ga0315909_100501573	F007111	N/A	METTILANGKPVGKFGSGSMKGIDETALEGIGSVVGPKGGGKSPTHDVLVKWIERVIELAKKNLEAANANAGGTLSASIAPEDIELSAKQIVVAIMANPYWKYVDQGVRGKSSSVKAPRSPFQYRDKFPPAQAMADWIANKGIPVVPTYSRELKRMRTKQEQGLVDGRSVAYWVFQRGTRATNFMSNALSPEMIDVLVNTIAETLGKSISVATKL
Ga0315909_100501576	F000557	N/A	MKLQDLTIDQFQRIGAIEFSSVLGDYDKRAGVVAIVEGVDISLVREMSAKSVLKRYKAIISEWNALPALGYKRKFKAGGKWWIPTVFTDELTAGQLIELMDANTTDEKQLLQNLHRIMATLCREGGLFGFFPKKYDGAAHAERAELMKKHAKVGDVWGVVSFFLLSSESYLKVLSDYSKHLMKKAGELT