Scaffold Ga0315909_10049522

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10049522
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3901
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F030360	Metagenome / Metatranscriptome	185	N
F089877	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1004952212	F089877	N/A	MKIDIQKVDLTQFMVHEHSLNGEIVYLIQPQHIGTKWTQDNKHMRSVVVNYAGEVISAGFPKFTNWGENPDHFPVPNSLKHCTVVEKLDGSLLIVSKYNGQYILRTRGT
Ga0315909_100495228	F000962	N/A	VENQEQTQIMNIHISEEIKFKYPHMEFRGKQRQLNDRTVIEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLSKSILT
Ga0315909_100495229	F030360	N/A	MSEQTYMNLKDVVKRPVLSEKTVNRSNKAFVRMVDSYQKWNESITADEPRATYEDDIFNCLSEYDLDGYNLAEYLKSKVYLEPDADLCAILDDMIYVKKSLEDEMLKQWVKENFLIISDDVVGKKVNAKQGSRKYENHYITGIRPDTYQVTISDNINAKGGRIVGFENVTFVD