Scaffold Ga0315909_10047836

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10047836
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3985
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005389	Metagenome / Metatranscriptome	402	Y
F009005	Metagenome / Metatranscriptome	324	Y
F011934	Metagenome / Metatranscriptome	285	Y
F029999	Metagenome / Metatranscriptome	186	Y
F082161	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1004783610	F009005	N/A	MLSENLMIERARTIGMDEELLSYAKQIQRQLSAEGDTAEWLDCLEMAYNELILSRLPG
Ga0315909_1004783611	F082161	N/A	MHCNMQLFENGEGEYYPVVDRMEQPTLVRGEYIPIGNRFHYPKQWGRKWAAKVLLEHKIKIEQDIIATAQKELGKLERCLDSIQHWSDTDE
Ga0315909_1004783612	F011934	N/A	RCGAIAFYWDTNPESELGYYDWEKTIWINLAQCKRMISVQKTILHEWTHAQQSYRWYNHYQIKYGYKKNPYEIQARENEKLVKRAYKRRTK
Ga0315909_100478362	F029999	N/A	MYNENPFRQFSASKMSNNPRFNVSVEYTDFMGNTHRIQCKTRKALNSAREFLSIFKAETTAINKILSEYPVKMGKFPKKFHSEIKADLQAAGFGTISKYLLK
Ga0315909_100478364	F005389	N/A	VYEVNRVKTMAKNRKPAKRGNIYETVSNNIQKITRPSGTVSYRVRVTEDGIMYSQYTNSLKAAKTLRNEWVG