 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031857 Open in IMG/M |
| Scaffold ID | Ga0315909_10040281 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4426 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (80.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001477 | Metagenome / Metatranscriptome | 687 | Y |
| F003863 | Metagenome | 464 | Y |
| F004110 | Metagenome | 452 | Y |
| F013279 | Metagenome / Metatranscriptome | 272 | Y |
| F018135 | Metagenome | 236 | Y |
| F027417 | Metagenome | 194 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315909_1004028111 | F027417 | GGAG | MSYDYRVTFVTDYLTITTNVCLELDDTTGNLSAEAYEQATINGMNNIEDEIGKIDETIINDITVTLILDDGEVELNEL |
| Ga0315909_1004028114 | F018135 | AGG | MTVERIKHSGALVVSQFIGEGAGEYLFTRTYYGYTLKQAKAQFKLAIEREGE |
| Ga0315909_100402812 | F004110 | N/A | MAYGLKYRTMTELHPVTYDLALSVAISISNRYKNHVERDDVKQECLAWAITRATWISEQMLEPNDDKRRHNEQRIAYQMRRVAERYARKEKALKSGYQTTDEAYYESAKLGQLLPFVIASVVDGTVLEQIQQMIQDGQPKGKSSPSEGGNLLATLIDIKRCFLKLDVQDQTLLRLRHFDNYTLQQIAGQLECAVSTADRRCNNSLRKLINLLGGQSPWQ |
| Ga0315909_100402814 | F013279 | AGAAG | MKYDYKCPQCDSKLTIERSIHEDAKDPGCFVCHITMARVYDAPGIQFKGRGFYSTGG |
| Ga0315909_100402816 | F003863 | GGAGG | MESKEVSGKQSIHYRNYRRARDKALVRLAHLYPETYKQLLDEQRSFDEQEGKTWIIASDSRLTVGIHTRANAVPEVAGRTDYDSSDEGNNGGEG |
| Ga0315909_100402817 | F001477 | AGGAGG | MSNVYTIHPQKSDLILFYEVVEAEGENTWGGADASQAIEWLVHSPVGSRILVSAWDSDEEDAHMVGQTLDITEIVKAASL |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |