Scaffold Ga0315909_10039263

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10039263
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4495
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F014590	Metagenome	261	Y
F044984	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1003926310	F044984	GGAGG	MTEQVTRRLATASRKAVRDRNYRRARDRALARLAHLHPDTYKQLLEMEKKEDERQGKTWIDLSGATDVPVVGVHTRATGADDLAHTGDASQDEGYNGGEA
Ga0315909_1003926311	F014590	GGAGG	VRTRHLQLVTSTRSVTTTIRSSVPSPYGPVRAGLTTSQTTQDQQLTELLNSLENVVASLNYKSFEVYDTLNTAIEAVSAALKDTQIGEAGTDETS
Ga0315909_100392638	F000821	GGAGG	MTEEYLRAKFNLCLDQAEKNIKEEDITLAIKNLERANSAMARLFGLEEDGE
Ga0315909_100392639	F001477	AGGAGG	VSNVYTIHPPKSDLILFYEVTTPEGENEWGGTSVIEALKWFESAPAGSRLLISAWDSDEEDAHLVGQTIDVTALIKEAKK