Scaffold Ga0315909_10038907

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10038907
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4520
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012971	Metagenome	275	Y
F016804	Metagenome	244	Y
F041091	Metagenome	160	N
F041736	Metagenome / Metatranscriptome	159	Y
F054004	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1003890710	F041736	GGAG	MILKSQSMRFVMATMMDVEHEWQTSKWKSKDDMINPDVPMIVQIGDYGYEVQSCGGDSDIEGFVIMCKDEPVCKWEGMECIKLEKNT
Ga0315909_1003890714	F012971	AGGAG	MDFEREKWMALQDLSPSDVADAICDSQAIVEAIQSNAWADVADMVRSRVELKAERLAQVANDLPLTPWVDTEQELNLWRYYRMELQREAIEQNKPKLPKINPYTSEASNEN
Ga0315909_100389072	F054004	AGGAG	MMTFSEVFGRIALIVALLMGINHVLTPSPQSQSIQVISKKKSLLKACVRLHKRKAKNYATVCEKRGIHV
Ga0315909_100389073	F041091	AGG	MQPSVKSEESMSEYKTQQQVYDELRNDILEQVAVEIEKMQGFGKDTLSSFGIFIRGMKK
Ga0315909_100389078	F016804	AGGAG	MSKLKTATIPDHHKVQAKATLNEAIDEAPDTVIVLCFWKDRGQFKIKTSTTTDRLVIIGALEEAKLKFQMDGYV