Basic Information | |
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Taxon OID | 3300031857 Open in IMG/M |
Scaffold ID | Ga0315909_10027280 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5610 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (82.35%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002009 | Metagenome / Metatranscriptome | 604 | Y |
F002826 | Metagenome / Metatranscriptome | 527 | Y |
F003304 | Metagenome | 494 | N |
F020665 | Metagenome / Metatranscriptome | 222 | Y |
F021063 | Metagenome / Metatranscriptome | 220 | N |
F022371 | Metagenome / Metatranscriptome | 214 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0315909_1002728010 | F022371 | AGGA | MFCLLDIAGIVWVISWFLLYSTLTLSAIYCAGYLVFKLIEIIRKELDK |
Ga0315909_1002728011 | F021063 | AGG | VRSTHLCRGDYDERLQQLAGEVALQAIRDLRMLRKRGMVKGMKIIKDHQGVPLNDALEYKNSHEVQKLLRDFKSGVIAWWCRASGVQIDNRTLLRKIKENDYVLPT |
Ga0315909_1002728012 | F003304 | AGG | MKQALVTQSFGDEWKKIIDLTRPRMEAYCKRHSIDFILIDKPLTHPAQYSKSAIGNIIATKGYEQVAFVDADVLIANDCPNLGEDAGVFCAFDEGAFLDRKPDMVKLAAAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWFNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDMIQLATSIQYDDAKLAGLGR |
Ga0315909_1002728014 | F002009 | AGGA | MTAPTIQEMGSAAQEIVWRVMGKGSDKSAYGDWLLKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETSIDHLERALVRSLFVLAQIRKEVPRL |
Ga0315909_100272804 | F002826 | N/A | MQVEAKDRLKWAREILSIARNKLVVERDRATHGHAIDMIQIITMVDAASLVCKEVVEGE |
Ga0315909_100272809 | F020665 | AGGA | MRKRKAGKNIKLIKTEQCDSVRIMIDIDNDLYEAMADAGKHHLAKDKMACFTYALNKALFELCEEIK |
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