NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10027149

Scaffold Ga0315909_10027149


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10027149 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5628
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036695Metagenome169N
F068494Metagenome124N
F082686Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100271491F068494N/AVTKLESILVSFFKNIYPFVTKLNVDKDSDGEDVEYTLTLFCDGKKIQSYLPVSPNFIDGTGKLKKDLLDRPFNHFVSVTDNSQSNIGRAKTLETNLKRDFYLARRMAGSDFKS
Ga0315909_1002714912F036695N/AKIIPPNDIVHKYTVASHNDVELLVIKVILNIDINDKGQRGDGERMLYENNFDAYKLSETIRTKILKPLGLLNKISWGVLIVIDASGNRIIEHSMIKN
Ga0315909_100271493F082686N/AMGRLILTEDDKNNIKLQYQGSIDRKFYDFLKANVETEGRQLDYSVRPFVLMYVDGKSRLLNNSKKYLVNVLLNAYGDDFPNLNDASKRLTAKKFIDELRKQYFYED

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