Scaffold Ga0315909_10027149

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10027149
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5628
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036695	Metagenome	169	N
F068494	Metagenome	124	N
F082686	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_100271491	F068494	N/A	VTKLESILVSFFKNIYPFVTKLNVDKDSDGEDVEYTLTLFCDGKKIQSYLPVSPNFIDGTGKLKKDLLDRPFNHFVSVTDNSQSNIGRAKTLETNLKRDFYLARRMAGSDFKS
Ga0315909_1002714912	F036695	N/A	KIIPPNDIVHKYTVASHNDVELLVIKVILNIDINDKGQRGDGERMLYENNFDAYKLSETIRTKILKPLGLLNKISWGVLIVIDASGNRIIEHSMIKN
Ga0315909_100271493	F082686	N/A	MGRLILTEDDKNNIKLQYQGSIDRKFYDFLKANVETEGRQLDYSVRPFVLMYVDGKSRLLNNSKKYLVNVLLNAYGDDFPNLNDASKRLTAKKFIDELRKQYFYED