Scaffold Ga0315909_10026171

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10026171
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5754
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011920	Metagenome	285	Y
F029371	Metagenome / Metatranscriptome	188	Y
F030019	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1002617111	F030019	N/A	MIVPELKDFDVYSPSELNFVYLMVTLWDEGDTETNGQILAEYEIKIYDAYAHYKITKKTYDEKLTIKQTRDCDECLERLYENNTFEDAYVEAYNDEGYMWGI
Ga0315909_100261713	F029371	N/A	MKIEKKLVALTAFLPVLADFIEDLNNQYVFKQSLKRKANILVEEIERVDRDILRIDGENAGKIFDEQIQLQILFRQWIDEVIELD
Ga0315909_100261714	F011920	N/A	MDLSLKILWAKTTVWTVKERIKNVREKLEKDKPNAKDYINGGKESEEYLLETIQVINLLEDEITNLNRELNQLARRNAQLRVAYQELQEEIKYKNVEL