Scaffold Ga0315909_10024798

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10024798
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5944
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F059881	Metagenome / Metatranscriptome	133	Y
F096905	Metagenome / Metatranscriptome	104	N
F098924	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_100247981	F059881	N/A	MERQEIQEEALKATEGRRRCSVVLGTGVGKTLVGLLHIERNTNAMQNVLV
Ga0315909_100247984	F000716	N/A	MYIMEKLKKQVRNYQLYAGKTYVQYEQDGYSAYQNYLYKRALYGLDALTEKELATMCSKKKQRIINVYKRAQVTLNKFKQQVTIQYSNAIFNKFFPNSPITQFLLTDTETDEKFKNTLTFKDLGIEKQDIIAIFIAEGILPKNFFDLKDAPLALPRLKYEVKA
Ga0315909_100247988	F096905	N/A	VESKIFTSVLGFNFELNLVDNDGQPVKVGAKRIEYLSSDVPNVGTKIGGESWFTNFNEPLLSKIRDYRRRND
Ga0315909_100247989	F098924	N/A	MLGKLFNKKKTYPKDNKFEVLIIGEDKSDFQEMLGITDKRKDELLRLALKSYKDYDLFTTSCQVAVAECTHINEVVFLMTILTKIRELEANPLSAILSGIGRGE