Scaffold Ga0315909

Basic Information
Taxon OID	3300031857 Open in IMG/M
Scaffold ID	Ga0315909_10023836 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031857 Open in IMG/M

Scaffold ID

Ga0315909_10023836 Open in IMG/M

Source Dataset Name

Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6079
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (95.24%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6079

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (95.24%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.7464	Long. (^o)	-83.3444	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Lake Erie, Ohio

Coordinates

Lat. (^o)

41.7464

Long. (^o)

-83.3444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049582	Metagenome / Metatranscriptome	146	Y
F050331	Metagenome / Metatranscriptome	145	N
F053831	Metagenome / Metatranscriptome	140	N
F062703	Metagenome / Metatranscriptome	130	N
F063331	Metagenome / Metatranscriptome	129	Y
F091941	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1002383611	F049582	GGAGG	MFANKTKIHQELKNRFRNESDLTVSMMTRAISDLDISNPAALDVMYEDVMFFTGDWPESEGWGSSDTSALIRSVKETLISNGYLKAVA
Ga0315909_1002383618	F053831	AGAAG	MSNWQKLNYSGDQFKPFHIRVDYCDEVVDFRDMYRFDDAVGAEWVDRTEKEIQDGYKYWVILRARVFLAGIEIGSHSLGGLLFDNTDQMESMMQSDFEDIIGEAVSVARHNLKQMADAMQERVTA
Ga0315909_1002383619	F063331	AGGAG	MTDIDNFALLNDLKELLNQVDNGDTEQVRSELKDIIDRVQADCDEKHRIYLERVERYMGHVDSALNTKGDK
Ga0315909_1002383620	F062703	GGAGG	MLKKKIDNSSKKGMMVGYIHHSSYVVAIEPGWNITPQAMAKLLQDRYSTKEAAIQLVDSAVLVPVFRKEDYEYVEGFGDVLESNLNFHGHNLRTHVGHLFLFMKGAWQYSDNAIDWDPVSEVFKDDSGVSFAGVRDALGAVA
Ga0315909_100238367	F091941	AGGAG	MTRIQFDMSRLKREFTRESLQAWAEFLAECNRANFYYKSDGWSQGELVDFDDTGFAEMELKWGNDHNDHEQYSDLVEYDIEKFYHEFDKMKEKLMTNPEEVIG
Ga0315909_100238368	F050331	AGGAGG	MKLKKIKRKADREAAIQWLCQKDFEFINEGDGAGLELLDSILEDGFKGYGNYTDRELNDAIAERKEMERMFG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315909_10023836

Overview

Ecosystem & Geography

Associated Families

Sequences