Scaffold Ga0315909_10022497

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10022497
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6305
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054683	Metagenome	139	N
F060728	Metagenome	132	N
F078411	Metagenome	116	N
F085381	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1002249711	F078411	AGGA	MDYDKHTNEVLERLQAHQILEILNTANQSIGKALKSIQELEHNATMYLDLRPTQEIVDDMNALHLHLHFLQSAKMFAKDEIKEIGFYLN
Ga0315909_1002249712	F085381	N/A	MKTVLEQLMEVNEKLAELEKAIMGTSTDEVECDGHCGCGCDESPVEVEDNGPEFDSAGFSEADRVEDSQYVVTEDEKYVGHVHLTRAELIDFTTRLTERVLDSVKKAVTDMELNADDLVTLELNSWSNAIEVELDNNTLANNVNSEIEDAVNLDADSISDEIDDIFGDMYLDSIS
Ga0315909_1002249713	F054683	N/A	MNKTERRKALNKLVFEMVTGLGYEVVDDGDGGRVTFIKPNHKNLYDSIEYHRSYFDVCVLNDASNEVKEDSKTIEWFIETQRKSLDI
Ga0315909_100224977	F060728	N/A	MSQKGRPIKEGSARQARLAARAARVAANGGVIKRGRPAKPKAEQTEVTPEA