Scaffold Ga0315909_10020296

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10020296
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6701
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F041187	Metagenome	160	Y
F058568	Metagenome	134	Y
F103130	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1002029611	F058568	AGGA	MPPIRVEKAGEIILKISALSTSLAHSPNIKLITMANTEIHRVVLTMSVTYNVSLSLVSGVGFEGVLGIGFLVIQGHQFFVSNW
Ga0315909_1002029613	F000332	GGAG	MRWLILLLLLGLVGAVAKNGCYVREFWSIAYTIHNPSERHQQMSMWLTNNAQHCRSQDYVVMWNNLSEWAGAADSAELRTKVIHGYKDALDREKK
Ga0315909_100202964	F103130	AGG	MAKAELRIRGREANAAARAVIRVQTTITQLEKKIDNYLAKP
Ga0315909_100202968	F041187	AGG	MTNSPDFATWSQANLAKFAEEAYAKLCEQDDRIQHLQCDLKTAIEAYRALSKEHGALINASVLKTP