Scaffold Ga0315909_10020114

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10020114
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6735
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F003212	Metagenome / Metatranscriptome	500	Y
F007691	Metagenome / Metatranscriptome	346	Y
F013279	Metagenome / Metatranscriptome	272	Y
F018135	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1002011411	F000821	AGGAGG	VNKEYLEAKVKLCLDQAEIDIQQQEIARAIKNLERANSALSRIFNLKEDENE
Ga0315909_1002011412	F003212	GGAGG	MKDKWLITLEIDTYDGDPAKWNWTDLVGDESKVIESQFKGRVLPTSEGESNE
Ga0315909_1002011416	F007691	AGGGGG	METIEQLISEIYEDNYSHLEFDEAMGGESCSCPIHTTLNTIVKYRDGKEGE
Ga0315909_1002011417	F018135	AGGCGG	MTIERVQHSGAVIVSQFIGEGAGEYLFTRTYYGYTIKQAKAQFKIALEGAK
Ga0315909_100201145	F013279	AGGCGG	MQYDYRCPDCNTELTIERSIHEVPREPSCFDCHIPMVRKWDSPAITFKGKGFYSTGG