NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10019016

Scaffold Ga0315909_10019016


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10019016 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6968
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000888Metagenome / Metatranscriptome847Y
F001279Metagenome732Y
F006843Metagenome363Y
F011486Metagenome290Y
F032275Metagenome180N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100190161F006843N/AMSGYNLDNYVDVPTRLTAALKKYPDLRIQETGREIIEMPDKSCFIRCTVTVWRDATDSIP
Ga0315909_1001901611F001279N/AVVGIKQTINSLRKIDPQLQKDFKADATAIAEPALKAAKAVYTQVPLSGMKYKWQEQGRTRPNFPFTVAKAINGVKVRFDTRRNAVGVILIEQKDPAAAIFETAGRANANKLNTSLLFVNLPVSPGRTRLIGPAVYKARRGIEAEMTKMIAKTMRDVQKDI
Ga0315909_100190162F032275N/AMARMKPRFTADEVWYELGASFPVTKGMTARLMVAERRGVIKNTGEITYAKRGGQHDHAQRLTIWQSL
Ga0315909_100190165F011486N/AMTKPYVITAQPVVKAPLAGMAKWVELAVKHSDGALWNNGIWVVRDVRHKPGVISNHARGLATDLSYRWLAQKQFGRKDGRKQSLAYVVKLLEHADTLGIQLVIDYALKRSWKCDRGTWQPLPSVDEGDWYHIEVEPRLAHDPEATKQAFQAVFGLSPKAAPQSV
Ga0315909_100190167F000888AGGMERQFFAQLDQNNVVVQVHCVTQEFLEANPDRYSGVWVETFFDTNNKTYAAVNMIYNFDTQDFVGQPFIERDDEQ
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