Scaffold Ga0315909_10017796

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10017796
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7246
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002653	Metagenome	539	Y
F014143	Metagenome / Metatranscriptome	265	Y
F052582	Metagenome	142	Y
F061792	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1001779612	F061792	AGGAG	MAYVCRNYDEALGTFALRKPVRSTKWQPNERPLDPRPQTHHRLIEGSNSYGKYFDVKLYQTVMARFYEPKVEDGKRVERRLYMGHGSQTSQQFMYHTLSVDFGANRLRDSEDRYSDESIIMPIYSKHFMYDEDNTPFSLDAVFVDGVLDTAQSEHTPHYRLVADTDVRKFKQRVAAHFEPYIMLAQMRMPEFRASCDINYRLGQKFGGEGFNRAYYMAIQEMWTDPEPRQQDIDVFFEMCQKAYDIIASKRGMQQPDFQVGGSWYSRQNGNKNSTVDELAKPIEMTEFRRAILDRIHKYVGSNSMKKPEEVKQFPKHSEYPRSNIQT
Ga0315909_100177962	F052582	AGGAG	LSKSKTPEPLYRQLTPEEDRGKTMVSKYYRVNQNMDGLGTGLHPYNIECNLRIDFALDGGIYKVEWSNKVLGERKQK
Ga0315909_100177963	F002653	AGGAGG	MNETMSQEELEHRVKQMSDDEQAHFKLLIHKLVMCYGEGNAQGVVIIGRAEDNFAGVVTLNCDEMEASQLMLAANDFFGFLNVLDAPPKESFN
Ga0315909_100177968	F014143	GAG	MNTKYLTHVRRIFATYDAPPETIRSYQRQWVRSIRRLGDKWLVARQVPRLEL