Scaffold Ga0315909_10015293

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10015293
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7886
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (50.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F003601	Metagenome / Metatranscriptome	477	Y
F015201	Metagenome / Metatranscriptome	256	Y
F019817	Metagenome	227	Y
F020341	Metagenome	224	Y
F087064	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1001529310	F003601	AGG	MEYTDEQLLAMALANLGEYIHDNSPQYILIEDDPRNEEDYDTWEYGTEPLPHDHTWHSTSIDVEVSPSEAD
Ga0315909_1001529315	F087064	N/A	MTTKPQHQYVIGERVAERPKAHGIFAIRQEVKDRIQQYRTQRYGTVVGINIKPNRSGSKQKFLLIKWDHLQSPTEHAQMRICPADQLVKLQAEGYGFQIE
Ga0315909_1001529318	F015201	GGAGG	MNKALIVYLIDKRKKQTRKDVESKHAVKQLEKQATATF
Ga0315909_1001529319	F020341	GGA	MTTHVYDVVRLVTQLKSLMKGFGSTQQPTKSASYWIAAYAKDNEDEPLGVVKKVLTYKPGQDKELLMIRYCNSVMKINRNIWEMLVHQGPTEIPDSGDQIVLRLSREKFKGSAQVN
Ga0315909_100152932	F019817	N/A	METEALPQVRGLTINQRNIYLYFLAHKKKHKNTPCYVPRCSTQVSRLDQYLNALVKLEQYGLMRVDRTSDNYTGWIMLEPKN
Ga0315909_100152934	F001165	N/A	MTNNKPTIPNSVDPQKLQFMQLTAKMKESADKYGVGFIGGFVAPDGEVFYMSNMNEEDTNALMPEDLK
Ga0315909_100152936	F001120	N/A	MTEKSPFNFDKTIAGFNLTEHGIKSYTKSIQLGPFQITFNARKSGVHGSISIPGTGLSRRNIKII
Ga0315909_100152938	F001807	GGAGG	MTVLAIEHTQFTDTHVTVTAVVDEMRLLYRATRLDPEEWAPALCTTTVELDPEEPIPLDEDGFCAYLDHLDPQWQLVECD