Scaffold Ga0315909_10014988

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10014988
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7979
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F027490	Metagenome / Metatranscriptome	194	Y
F098944	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_100149881	F001915	AGGA	MEWTLAHPLHDVDDIVNMADSVFGHEADGILTRDKAVFRKNVTIATTVQVFDKSKEFIAVCRGDKLVKTFIGDAAEDTLLAYCWFDRGGYTTYANEEISNAKFHHVDLSLSPRLRVRLINEMIDQHILWANRWGIPVVCSTSIRAEHDGFMKIHKKRGFTVHGSYAWLRTEKGIECLTK
Ga0315909_1001498810	F003521	AGGA	MKSLVSNIRDYFNRRTKVIDSHKEAHVTRKTLVIENGECAKRLLKNDDFALLFNLYRFYLLEMLEDSKDDVNRIDNAQRVAGVRDFIEFIERTEYLGKVANKNVETLTK
Ga0315909_100149882	F098944	AGG	MFDEIRPEGSTVTSEEIKKKAREYAKARRAQSKAMKLATGQIEPKAIETVPVVDEFDMTAFVPRSQAKAGRPKSIVNKVTEYGALFNKLNDERTSRGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDAEDALKDFMESLRKV
Ga0315909_100149885	F027490	GAG	MSYGTVINGGAQMRKGLTKGINDKLVDHAAENGRRDQVAKAVNNAYTVNTVSSQHTNNVKNSGKFTKPSNTSKNYAL
Ga0315909_100149889	F004695	AGGA	MLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEIDGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPVRSPITQYKEVEGTRDQLRVFETLAGDKGLTAKRQNMRKIDVDLQGAMQEAMAPDESMQEPTGDELQDALRNNTIYRAKYKLTGYETSIRVKHVGQHYFVCNPTIPTIQDQDFVGFYDPMTIHECKAQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWLRRDIDNDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPSKHIFEFQPMQGNLAYVESAMNRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLIQYSDDFNIQQLAGTCLKGAPFMDAISIENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFGQAMMQIPPEVPEMFIKIRRPFEDTLRVLGVKDVDAYLPTMEEAVKIMQAQAAKGPSAEQQETQSKVALNNAKAEESGSVTALNIRKAQDIDTDDMFEALAAKRGELSSVQV