Scaffold Ga0315909_10010714

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10010714
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9759
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001424	Metagenome / Metatranscriptome	698	Y
F003662	Metagenome / Metatranscriptome	474	Y
F011843	Metagenome	286	Y
F035676	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1001071412	F001424	GGAGG	MGQEVSKLSTGYPQNDKLVEDERVFCQNCANAEMVEQRQSMPAEQMERHRKVNAKPLQWMFDQAKVKGGWATVTWSEHQCGRTGLAAFPTDVKHRCHLFQAKATAVESESWWLT
Ga0315909_100107147	F035676	N/A	MKSNFVNNPVRLNGNCHGHKLQICNKCALQKPPEGGVEMSATRWLCASCWTDRITGRNLKQVRDL
Ga0315909_100107148	F011843	GGA	MNTQMLIKVRQLFNVDYVPRSTNRHNQLQYVKAMRMLGNKWLTHKDNEVQKIQ
Ga0315909_100107149	F003662	GGAG	MKSKIATVVLKGQEWIVIDTDEEKDGKVFCTLMSPDGSTVLHAWVNINDIVGII