Scaffold Ga0315909_10010531

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10010531
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9864
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (96.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009505	Metagenome / Metatranscriptome	317	Y
F038004	Metagenome / Metatranscriptome	167	Y
F079389	Metagenome / Metatranscriptome	116	Y
F082598	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1001053112	F082598	AGGAGG	MMFWNREPKTMPVRDVQSEAVAAIIQGSAVLPSRRLIGAIYTALLDNPGISVAELDDLANKISRLAWNRGRR
Ga0315909_1001053119	F079389	GGA	MAPPRRHITKDMLIACREKGWHLTLAAAHLEMHRSSVAAACERFGIVLPMHNFSPQRVSKKSKVWVDICDGETKPKVKLSASKSSIQRALDDIERQKRLRAAG
Ga0315909_1001053122	F009505	AGGAG	MIGRMVGMLVGRKLKEKAVDAVLDKVNLPDPVEGAIKIAATGNVGDLLGGMGKDMAQEAVLGGLLKKKPKK
Ga0315909_100105319	F038004	GGTGG	MAVKLGAMDTHIVLTALWDYRETLTIVNDTSPNPQIAAKIDSVDRLIASFKKSYFALDRLGIM