Scaffold Ga0315909_10010205

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10010205
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10052
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008616	Metagenome / Metatranscriptome	330	Y
F008811	Metagenome / Metatranscriptome	327	N
F023328	Metagenome	210	N
F027445	Metagenome	194	N
F030061	Metagenome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1001020510	F008811	AGG	MATTVLSGRQLTLTIATKNYSEQILSSAINFDTERLTFDTLAGKAYKYIDSNVTLDIEFLNDAGKSPDSLYKALWDATESAPDTTLAFVLTLTTGVSLTGTVLPQYPPVSASGADAQTCSVSLQVVGIPTEDLTA
Ga0315909_1001020511	F030061	AGTAGG	VALSTLRSGLKTALTDNTKYSCYDHVPEVIIPPAVLILAGDPYLEPVVIGNNKNWRVRLTLEVVGATYSNPSALTNLEDDIEAVCALLPTNWSVLSVSSPRIRATNSTDLLSSEIQITTVYTG
Ga0315909_1001020515	F027445	N/A	TVESIKAGLNSPPEIFMTEVLSQWVETMNSSFPQGLFNQLIQPNLTLKPDKPTWLGLEISPERDMWALTGSQMQEDKTIAVGLMEYQVSDKPIDDLHIAGKVAEWAKHYKAEEVIANRFTCDSVVGKLRQAGINANVVLGSNYFKACDETLAAMSGNRISHANQPELTDSVNKCTKKVNETGSWYVVRSKKATAAISMILAIHKAEEYGQRGQNQDIIVA
Ga0315909_100102056	F023328	N/A	MTIYTPEYKVTIAGVEQTSSILNDGTITFGRNDFFEPTQPSYCNIELLNLDGTSPDINLLDIVVIEVKDSSGSWVKLFTGEVSGVYNSIAAAGVNAQPNVMQIQAVGALATLVKRSAGAVAYPQELDGERIERILQETLFTAWEDLSNTFTWNDLGTETWDTYGVQGLTTIDAGRYEVLARDAELAVASDLTDLTSNSGLGYLYETTAGEIGYADAERRTDNYSTNIISIDADLLNAELQTRLQTADISNSVVVRYGDPVAEHVAQNDASIDSYGLLELIRDTILAESADAQEQAENFVNYRGTPRASMESISLNLANSNMSDSVRDDLLAVSMDSLIALTNLPVGLFPSGTFEGFTEGWTWTLGRKNLELTMSVSNSVYSTLDTQWEDYNPTTQWQNLANDYTWLDVA
Ga0315909_100102059	F008616	AGG	MLKLKLAWELETGEKFEDWTRPVELSLAEKELYHGKSIIKILTEEEMPSNTLLLFLAHKIQQRVTTKVENFEAWKKQVVTIAAVDFETANFTKPVQSGV