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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031857 Open in IMG/M |
| Scaffold ID | Ga0315909_10010188 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10059 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (39.13%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009202 | Metagenome / Metatranscriptome | 321 | N |
| F010908 | Metagenome / Metatranscriptome | 297 | Y |
| F024249 | Metagenome | 206 | N |
| F025437 | Metagenome | 201 | N |
| F082108 | Metagenome | 113 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315909_1001018813 | F024249 | N/A | MIFTYNDLKFWLEDADLLPQSYWDALEDYDPDNKNSDEILAKFLGYVHVADFYNYEMDITYVEETYNEDGYTNTVAYPTTSVYGEAPKLAEDIYAKWLNWATTVASEE |
| Ga0315909_1001018820 | F082108 | N/A | MLYIVTPCSRPQNLVRLKQGIPEYATWVVMMDASTNYKGATSASITHYSNRTGDWGHPLRNEFLELYADSFTKEDWVYYLDDDNVLHPKFLEEWSNLHSLDCSIVTWGQVGRLRPTDQPRVGNIDTACYMFKPHDLPNLRFEMTYEADGTFAQAASEQGTLICVEQYLCYYNALK |
| Ga0315909_100101885 | F009202 | N/A | MYPSDDSHDLYIREKQLMLAGTAMWLAKQAADKANGREVQDDLLHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANSKLRVDAEQMIYEIQRLQGIIEDQL |
| Ga0315909_100101886 | F010908 | GAGG | MKQILSPFQKYECFAVDGVDYLVVDYTIVQDKDDNLVEWASEMKFKRLKDHKHFTMPITKIITNHQEGRAKLCKCK |
| Ga0315909_100101887 | F025437 | GAG | MQMRPFEIRQLKVSKEQYFARLGFPDNGGRAHKESTARAAFVSAFRNHATLHELGEAIDKDHSSVAYAVRMHKDRLIYGDYQHYYKVACCVLEENPMACIDKPDFESMQVELNKLNDVVAELSKYKELYLTLKKTFDEF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |