Basic Information | |
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Taxon OID | 3300031857 Open in IMG/M |
Scaffold ID | Ga0315909_10010188 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10059 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (39.13%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009202 | Metagenome / Metatranscriptome | 321 | N |
F010908 | Metagenome / Metatranscriptome | 297 | Y |
F024249 | Metagenome | 206 | N |
F025437 | Metagenome | 201 | N |
F082108 | Metagenome | 113 | N |
Protein ID | Family | RBS | Sequence |
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Ga0315909_1001018813 | F024249 | N/A | MIFTYNDLKFWLEDADLLPQSYWDALEDYDPDNKNSDEILAKFLGYVHVADFYNYEMDITYVEETYNEDGYTNTVAYPTTSVYGEAPKLAEDIYAKWLNWATTVASEE |
Ga0315909_1001018820 | F082108 | N/A | MLYIVTPCSRPQNLVRLKQGIPEYATWVVMMDASTNYKGATSASITHYSNRTGDWGHPLRNEFLELYADSFTKEDWVYYLDDDNVLHPKFLEEWSNLHSLDCSIVTWGQVGRLRPTDQPRVGNIDTACYMFKPHDLPNLRFEMTYEADGTFAQAASEQGTLICVEQYLCYYNALK |
Ga0315909_100101885 | F009202 | N/A | MYPSDDSHDLYIREKQLMLAGTAMWLAKQAADKANGREVQDDLLHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANSKLRVDAEQMIYEIQRLQGIIEDQL |
Ga0315909_100101886 | F010908 | GAGG | MKQILSPFQKYECFAVDGVDYLVVDYTIVQDKDDNLVEWASEMKFKRLKDHKHFTMPITKIITNHQEGRAKLCKCK |
Ga0315909_100101887 | F025437 | GAG | MQMRPFEIRQLKVSKEQYFARLGFPDNGGRAHKESTARAAFVSAFRNHATLHELGEAIDKDHSSVAYAVRMHKDRLIYGDYQHYYKVACCVLEENPMACIDKPDFESMQVELNKLNDVVAELSKYKELYLTLKKTFDEF |
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