Scaffold Ga0315909

Basic Information
Taxon OID	3300031857 Open in IMG/M
Scaffold ID	Ga0315909_10010182 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031857 Open in IMG/M

Scaffold ID

Ga0315909_10010182 Open in IMG/M

Source Dataset Name

Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10064
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (21.74%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10064

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (21.74%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.7464	Long. (^o)	-83.3444	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Lake Erie, Ohio

Coordinates

Lat. (^o)

41.7464

Long. (^o)

-83.3444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005814	Metagenome	389	Y
F006463	Metagenome / Metatranscriptome	372	N
F007860	Metagenome / Metatranscriptome	343	Y
F009004	Metagenome / Metatranscriptome	324	Y
F009958	Metagenome / Metatranscriptome	310	Y
F034772	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1001018210	F034772	N/A	MKNLIDYFTPTTEEHKSFLRHFLSTLTAFIVLGGMFYCLMYFKAL
Ga0315909_1001018211	F009958	N/A	MENRILEIHHREWILNYEFLGWQYQIFGTWEFKDYDEVSEFAFIELDVDVSEKWIIETDDHLQPHIINIRILEDVRLEMQEAINSDLANYNFWEWKASNDESNYNFYHEL
Ga0315909_1001018212	F006463	N/A	MNTGTIYEQMDWWQRQWRGSFDLGLYLEICRIKKNENQIQKPMKRFKATFKTWAYVGAPVKLETRIVEAYDIQHVKNLIQKNDDIILEIKQIEQ
Ga0315909_1001018218	F005814	N/A	MELDLLSSRINLNHTCLKLQVSIDEIKTKHPNRTDLISSMEQSLHEIKKAMLVYQTLEKEFRATRQINFDLQHINLELKQDVKDLKKNIEFNNMEL
Ga0315909_100101823	F007860	AGGAG	MKSNYLATLYFIAGFLTSFSLMFQGTEPYINLAGVTLFLYLTFSLTEALEEL
Ga0315909_100101829	F009004	AGG	LVTHTNLKAMKTEFNKVIDFLETQQQENKINTNQLHLIIQTLCTFLDDEQLQEVENLFNQFKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315909_10010182

Overview

Ecosystem & Geography

Associated Families

Sequences