Scaffold Ga0315909_10009814

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10009814
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10297
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003134	Metagenome / Metatranscriptome	505	Y
F014089	Metagenome / Metatranscriptome	266	Y
F024931	Metagenome	204	N
F025683	Metagenome / Metatranscriptome	200	Y
F033645	Metagenome / Metatranscriptome	177	Y
F058101	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_100098141	F003134	N/A	MTQWTPVWLVEIDGVSYTDAVLANLTIRSGRTNIYEQAQAGYINLQLLDVNQATIPVNINSTISVQVQDTSSTYVPIFGGTVVDIAVEVRDVGSTMFTQTYSITALGALSRLPKALTNGVLSKDFDGNQIWTILSDLLLNTWAEVPAALTWATYDPTTTWATAENVGLGEIDRPGDYELAARSSERTDVYSLVSKLATSGLGYIYEDAFGRISYADATHRSLYLSNNGYVQLTANQARAAGLRVETRAGDVRNNVTIQYDATSSSEESASDANSILQYGTLSQIISTTLHNSADATQQANFYLALRKTPQAIFSEITFDLTNPELDDSDRDNLIGVFMGEALAINDLPANMGGIFQGFVEGWSFQASYNQLSITLNISPTAYSLQALQWDEISAAFTWSGVSPTLDWARATIIT
Ga0315909_1000981410	F024931	GAG	MTLTREEETVCMLAAVKLQVDTRKFMDNPQRHQKEMGTFEYLVESAEAIGSEWVVAKYFDLPFNPYENKFKTKADVGNAIEVRWTKYVAGQLIVHEYDRPNDIAVLVTGQSPHYFIAGWIPIAMAQRPKYRHSKQPNWWVTQINLQPIENLRKSNYGQSAI
Ga0315909_1000981411	F058101	GGTGG	MINPKDIHKATDGKIYSFSGFGGVMNCSQCDDDTMVNEYDRDDGLVVWFCKKCEDRLHL
Ga0315909_100098147	F025683	GGAG	MVLDLLDPQTLGRLVLVVILMVISAAAGYAKGFKEGKREGMARRKAISRHLSNKVAD
Ga0315909_100098148	F033645	AGGTGG	MAGFLDNYEDVATRIKRFWETHPSGRIENNIVEFNAEKGFILVQTQIFKEYEDQKPSAIDYAFGNVATYNVQMKKFFVEDTVTSSIGRCIGLLLGTDKRPTRQDMEKVETISTTLAKSTADDYDPWSKKFGDVPSYKTAAEAEQSGIPSLGSSMDEIAKTLGGQLIEEAPQCSHGHRIWKQAHEGAPKNWGGYFCTERTKATQCAPNWYVLASDGKWKPQV
Ga0315909_100098149	F014089	N/A	METPGMSDLVEIIYPQSMTARLLQNGEVIAEYKVEQCDGCAKLLKLDPFGYKIGQAGEKLAWLCGECR