Scaffold Ga0315909_10009274

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10009274
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10660
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (68.75%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006893	Metagenome	362	Y
F010247	Metagenome / Metatranscriptome	306	Y
F010917	Metagenome	297	Y
F013082	Metagenome	274	Y
F013525	Metagenome / Metatranscriptome	270	Y
F019996	Metagenome / Metatranscriptome	226	Y
F022646	Metagenome	213	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000927419	F022646	N/A	VEIRKANIIHSVKHQKFVASFPCVVCGNNTQVQCCHIRSIPKLGNVGKGIRDDAYCIPMCFTCHNLQHEMGELAFFYKFNINPIHIAMRLSVISPCDKINKGKASGKYNGKLNYSEHYRINKKDSLR
Ga0315909_100092742	F013525	AGG	MHDLALKNPDQIKAELDTISEEMSEALYTFRRCEEFKKITFSQITLTKKIEKNCSVAEAEKWAYSDENYKTIIEGLLVAEKNYSILKGKYANLQSWVDLYRSWLVTNRELSR
Ga0315909_1000927420	F006893	AGG	MESLTTQNITESTKKILCDKKLYKDINFFAVPHNKVLLAVIRSITKKSFAQIGKDYKKSWFSIYASVKDTQKNGLKSFTNKVIELVREDLK
Ga0315909_1000927425	F010917	N/A	MNLDKIIFGSRIVNLNFIDKEQASKKKIFGEFDSDTNTLTLDKSLDHIQMSNTIIHEICHLIHDEYKLDLPLKAEELVCNSLANGLCHILYQNQDLLEFLYKSLKKA
Ga0315909_1000927427	F019996	AGGA	MNKCLFCKRPMVNKLEQHIKACHKCIVDLLMKKHNLKVKKQAPVNLNTKKYEKI
Ga0315909_100092745	F010247	AGGAG	MNVQGVIKYVYDNRLGKDGVANKFPNFKFKVGEQEIVLWSSILHPAIAKGKTVSVTCGASKKNGSLFVLTKEDKSPMIQELPNGAKPDTSFNPDELEKELQQVAKDFDADLIVEPKKSINKDEYMFVMALAKSAIESGKINVTKEELDILIKDLKFLFQMNFHN
Ga0315909_100092748	F013082	N/A	MSKQSWTFCFKLGENMTTVKEEINRLFLESQKNPSIVANEALYYFDLCSVEDKTITLNEFYKQFPYYNPDRDCDYWKKQNERWKEIWKQETI