Scaffold Ga0315909_10008913

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10008913
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10931
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (64.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023321	Metagenome / Metatranscriptome	210	Y
F024533	Metagenome	205	Y
F053899	Metagenome	140	Y
F057311	Metagenome / Metatranscriptome	136	Y
F091391	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000891325	F053899	AGGAG	MSQAEFDIVMNRIKNLTEYEVQVTIPEDFVFDGPVPFDMSISGDTAWVKVIAETLEEAKLRVYDYFEGEYK
Ga0315909_1000891329	F091391	N/A	MAEIYTFIPKQKCKVDNTELDRLRAKLLELHNARDVINKEIRYTKDAIKLLEKGEK
Ga0315909_1000891330	F024533	AGAAG	MPIEKTCPRCGTTHRKRGEFCSRSCGNVRVHTEEDKQVRREKLIEYHQTPEGAATRSKSAKITSAMRKGEEWTNIDADEYAVGIPDVTDYAAEYDITWHRAEKW
Ga0315909_1000891332	F057311	N/A	MWQKMQKKSSNQKVKNLRLDIEGKVKFWQPVVRNGWWIKFSVYRDHFILLTFISRYTGQTILRYYTSEEEAVAYINFITTCSAKDTVQSA
Ga0315909_1000891333	F023321	AGGAG	MFLNQPQFPSFYSWNDVQRKSEDITIKTIDFNKNVIDLGISYFNDITGKHFTTYTEKALNFNSNVAEDAKKIIKSESKKSQA