Scaffold Ga0315909_10007666

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10007666
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11986
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (42.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011740	Metagenome	287	N
F012434	Metagenome	280	Y
F017799	Metagenome	238	N
F048176	Metagenome / Metatranscriptome	148	N
F082107	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000766611	F048176	GGAG	MNNDNEIKAQAIINAATEQFRSLLETNFRSIAKAAQDGFIEDEEATEPKAKASFTVEWDSLAQAPKVGVKIAWSVRFKDESETEIDPLQSKLGLEEMK
Ga0315909_1000766620	F017799	N/A	MTTQQTHDQDQRELEALRFSARAARAITTLEMQRKTITREYGERIKKIRALILILQQRESIGQLGIDGINAIEISPELRKLIHNPVGDLT
Ga0315909_1000766621	F011740	N/A	VITATYDRAANFEASYDGARSDAGRLSAEIMERLVEMHELKLTSAADLCRRLGTLADLSPTMFLVTLRLGSGDVSAVRQSFGEMAAKTGRTRQALHYEWAHEIERVRLVFPALAQLMTDYRQATDEAERPDREAAP
Ga0315909_100076666	F012434	GGAGG	MSTTEALTHALILAITAPDQARADRAIALAESIGAGCTAKQIATAKRNAAKLSK
Ga0315909_100076668	F082107	AGG	MTTEQHTEILTELRAIRAALEAKPRPAQATTTASTGTPNSLPPPAVEILNAGEVQIHFGKNTGTPLSSLTDKQLLWYGADRPEQLKQDGTPFAPREADVLLKNACRTLWHQRKSGAPIVLAAQPLDDGEQVPF