Scaffold Ga0315909_10007161

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10007161
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12495
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025745	Metagenome / Metatranscriptome	200	N
F048311	Metagenome / Metatranscriptome	148	Y
F090395	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000716112	F025745	GGA	MPMPTLVVSFGTGSGFSPVTTSDILEVSIRRGREMQNTFLDSGTAVVVLNNQSGNYDPSNASSPWYGTLTAGMQVQITGNGIAIFTGYLEDNVVNQGIYPTVQLTFVDGLAKLGKTIAPALATSSYQESAATRAGRLLDMASWPAGSRSLTGTVTMLKSAFGLSVLDHLEQCANVIGGRFYISRTGVATLVPLANKFSRPTQLLFSDQGDAYSVGYDGIYTNPGTDYVYNQAIIFRGAKKNQITITYNPSVATYGLKTKKLDAPILSETSAVNLGVYAARKDADAVVLAEQIDFSALNLGVLQTDFLETELNDQVTVKRETYDNRVITINGVIEGMAHSITPEDWRVSYFTSVLDPYSIT
Ga0315909_1000716114	F090395	GGAG	MNQYIVGFNAYGTLVEEQVEATDPDQAKIIAQPKHPDLPIILVKWLKP
Ga0315909_1000716115	F048311	AGGGGG	MDKETQLDINTVIAAMREQIGLLALDKAMLTARIQDLEKQLKEKES