Scaffold Ga0315909_10006825

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10006825
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12836
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009265	Metagenome / Metatranscriptome	320	Y
F009526	Metagenome / Metatranscriptome	316	N
F009679	Metagenome / Metatranscriptome	314	Y
F029096	Metagenome	189	Y
F048270	Metagenome	148	Y
F058100	Metagenome / Metatranscriptome	135	N
F090105	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000682512	F090105	N/A	MRWFADSPLASFIRVFGAGVLGWVLINADTLKIHPALVIGLVSALPIIINWLNPEYKNYGKGHQE
Ga0315909_1000682514	F048270	N/A	MTQILVAGQLAAALIAILSLGGILVKWGIVKPIKAYIDTMTYAIQPYANGGKSLPDLIEKVDALHLVVQNHIDTRHDTPISTKCLCDSDARA
Ga0315909_1000682518	F058100	GAG	MMMDNKDAMYISILKKLYGAYEALPYFAESCEICSETLHPEDIGVDPYTNTRTWMTKCCGEIQTYQQKLEPQI
Ga0315909_100068253	F009679	AGGA	MALITLSELKAVLGIGDIYADAIVQAVADSAENIILSYLIFDDVAINAVSLTNNVARFYCYDNTFVVGQALTVTGCGSPFNGSRTVTKEGVDEYGVTFFEAAITNADITKRNIIPSGRAVLTSQAALYDTIPEVRESAMAVACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYLG
Ga0315909_100068255	F009526	AGG	MPATYITGRNLTLSINSVSYADQASTVTLERENNQQVLEVLSGRAYKTVDKTATLNVELYLDDTSSAGIISALWDAANSAPDTSLPFSFDVNGDTFTGSVFPVFPTVGGAATDVLTTSLSFVVEDGTVARA
Ga0315909_100068256	F009265	AGG	MQYEVTTQQGNKYIVSDDSAWLWVEIERELGYTMHQAAEKMSQGSLDVITCMLYKAAKSAGQTKLPSQQAWVINEFDTFEVVEESPKES
Ga0315909_100068257	F029096	GAG	MVMAETRETIKIQPDMRDLRDTLKALNRMDKEANLELKDDVQSITMWMAQIIQQAGFAHRVYPKQAAIVARTVRGNRDRIPSVTIGGSKGRASGGANAGQLLFGNEFGGDRNAYGNLNAFPNGGFRFPPRTDREGRGNVGYWIFPTLKDNQTELTDKWKAAVQRVFDKWGSPN