Scaffold Ga0315909_10006181

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10006181
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13579
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (97.37%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F002598	Metagenome / Metatranscriptome	544	Y
F002935	Metagenome	519	Y
F003965	Metagenome / Metatranscriptome	459	Y
F019324	Metagenome / Metatranscriptome	230	Y
F021757	Metagenome	217	Y
F022197	Metagenome / Metatranscriptome	215	Y
F025743	Metagenome	200	Y
F034573	Metagenome	174	Y
F048982	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000618112	F019324	GGA	MLGYTKTDLDEMTNAIDSAITTVNSDDDPWLHSRLYMAREFLDGLWAEGYFD
Ga0315909_1000618113	F001507	AGGAG	MTTTYKPYTISELIEAIYEDHYSHFDFMENMNGGECYCQIHTTMNTIVKYWGE
Ga0315909_1000618114	F022197	AGGA	MTTETIEDPTLYADYYSCDLAISITNIKAKNRHHAEAVMQTFIDEIAKVMDDELSWDDAQWEVEENVYLPELGEWHTK
Ga0315909_1000618115	F002935	AGGA	MRERSKGYIGQIVDGKKLATIANGIYNLQYSSNFSECTVDGLLFITLEEKNVFGDNKYALVCSEGVGWEQDTYGCLEVPTNIGAMGLWNGRVFISVDTVKECLTDQTEDIADYIRVFGDRLDNNCSLWQSKMSVAEDTMVI
Ga0315909_100061812	F034573	AGGAG	MYRISRAVHTSKEEKTAIAIGKLLSDFHLDLEKVGYYLAKATPYLVYRRALEVLESAQFQEDLIEQKRIEYNHDRLF
Ga0315909_1000618123	F025743	AGGAG	MTATMIDMKFVYADLLTPSQLMEGDLINIDNDIVEVISVTDDATGDNYTITHKNEYDEVEETFCTYEDMFKLYVFVDDDE
Ga0315909_1000618128	F021757	AGGTGG	MMTRKDYVAVAEILSSYKDLIGDEFTFEDLVEDFSAMFEADNPNFKHEKFREACLK
Ga0315909_1000618131	F002598	AGAAGG	MATKLYTIEDLLIGKTYRSRSRFFEGEIISAEKRDGVWYGDNTEAYLIGINAKGSIRNKYATIAVKVSD
Ga0315909_1000618132	F048982	GGAG	MISIELQDVLNVCRQIRGNDRDSGAHYLLGYLWANTSDKEKTRIAKLFAKDLEELGKDNE
Ga0315909_1000618134	F003965	AGGA	MTSLNTMCKTHIPFVPAISEVGDDQFTFCTECEQNIERWYNDTDPERLPMWTDWKVSK