Basic Information | |
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Taxon OID | 3300031857 Open in IMG/M |
Scaffold ID | Ga0315909_10006181 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13579 |
Total Scaffold Genes | 38 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 37 (97.37%) |
Novel Protein Genes | 10 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 10 (100.00%) |
Associated Families | 10 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001507 | Metagenome / Metatranscriptome | 681 | Y |
F002598 | Metagenome / Metatranscriptome | 544 | Y |
F002935 | Metagenome | 519 | Y |
F003965 | Metagenome / Metatranscriptome | 459 | Y |
F019324 | Metagenome / Metatranscriptome | 230 | Y |
F021757 | Metagenome | 217 | Y |
F022197 | Metagenome / Metatranscriptome | 215 | Y |
F025743 | Metagenome | 200 | Y |
F034573 | Metagenome | 174 | Y |
F048982 | Metagenome / Metatranscriptome | 147 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0315909_1000618112 | F019324 | GGA | MLGYTKTDLDEMTNAIDSAITTVNSDDDPWLHSRLYMAREFLDGLWAEGYFD |
Ga0315909_1000618113 | F001507 | AGGAG | MTTTYKPYTISELIEAIYEDHYSHFDFMENMNGGECYCQIHTTMNTIVKYWGE |
Ga0315909_1000618114 | F022197 | AGGA | MTTETIEDPTLYADYYSCDLAISITNIKAKNRHHAEAVMQTFIDEIAKVMDDELSWDDAQWEVEENVYLPELGEWHTK |
Ga0315909_1000618115 | F002935 | AGGA | MRERSKGYIGQIVDGKKLATIANGIYNLQYSSNFSECTVDGLLFITLEEKNVFGDNKYALVCSEGVGWEQDTYGCLEVPTNIGAMGLWNGRVFISVDTVKECLTDQTEDIADYIRVFGDRLDNNCSLWQSKMSVAEDTMVI |
Ga0315909_100061812 | F034573 | AGGAG | MYRISRAVHTSKEEKTAIAIGKLLSDFHLDLEKVGYYLAKATPYLVYRRALEVLESAQFQEDLIEQKRIEYNHDRLF |
Ga0315909_1000618123 | F025743 | AGGAG | MTATMIDMKFVYADLLTPSQLMEGDLINIDNDIVEVISVTDDATGDNYTITHKNEYDEVEETFCTYEDMFKLYVFVDDDE |
Ga0315909_1000618128 | F021757 | AGGTGG | MMTRKDYVAVAEILSSYKDLIGDEFTFEDLVEDFSAMFEADNPNFKHEKFREACLK |
Ga0315909_1000618131 | F002598 | AGAAGG | MATKLYTIEDLLIGKTYRSRSRFFEGEIISAEKRDGVWYGDNTEAYLIGINAKGSIRNKYATIAVKVSD |
Ga0315909_1000618132 | F048982 | GGAG | MISIELQDVLNVCRQIRGNDRDSGAHYLLGYLWANTSDKEKTRIAKLFAKDLEELGKDNE |
Ga0315909_1000618134 | F003965 | AGGA | MTSLNTMCKTHIPFVPAISEVGDDQFTFCTECEQNIERWYNDTDPERLPMWTDWKVSK |
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