NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10006181

Scaffold Ga0315909_10006181


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10006181 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13579
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (97.37%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Associated Families10

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001507Metagenome / Metatranscriptome681Y
F002598Metagenome / Metatranscriptome544Y
F002935Metagenome519Y
F003965Metagenome / Metatranscriptome459Y
F019324Metagenome / Metatranscriptome230Y
F021757Metagenome217Y
F022197Metagenome / Metatranscriptome215Y
F025743Metagenome200Y
F034573Metagenome174Y
F048982Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1000618112F019324GGAMLGYTKTDLDEMTNAIDSAITTVNSDDDPWLHSRLYMAREFLDGLWAEGYFD
Ga0315909_1000618113F001507AGGAGMTTTYKPYTISELIEAIYEDHYSHFDFMENMNGGECYCQIHTTMNTIVKYWGE
Ga0315909_1000618114F022197AGGAMTTETIEDPTLYADYYSCDLAISITNIKAKNRHHAEAVMQTFIDEIAKVMDDELSWDDAQWEVEENVYLPELGEWHTK
Ga0315909_1000618115F002935AGGAMRERSKGYIGQIVDGKKLATIANGIYNLQYSSNFSECTVDGLLFITLEEKNVFGDNKYALVCSEGVGWEQDTYGCLEVPTNIGAMGLWNGRVFISVDTVKECLTDQTEDIADYIRVFGDRLDNNCSLWQSKMSVAEDTMVI
Ga0315909_100061812F034573AGGAGMYRISRAVHTSKEEKTAIAIGKLLSDFHLDLEKVGYYLAKATPYLVYRRALEVLESAQFQEDLIEQKRIEYNHDRLF
Ga0315909_1000618123F025743AGGAGMTATMIDMKFVYADLLTPSQLMEGDLINIDNDIVEVISVTDDATGDNYTITHKNEYDEVEETFCTYEDMFKLYVFVDDDE
Ga0315909_1000618128F021757AGGTGGMMTRKDYVAVAEILSSYKDLIGDEFTFEDLVEDFSAMFEADNPNFKHEKFREACLK
Ga0315909_1000618131F002598AGAAGGMATKLYTIEDLLIGKTYRSRSRFFEGEIISAEKRDGVWYGDNTEAYLIGINAKGSIRNKYATIAVKVSD
Ga0315909_1000618132F048982GGAGMISIELQDVLNVCRQIRGNDRDSGAHYLLGYLWANTSDKEKTRIAKLFAKDLEELGKDNE
Ga0315909_1000618134F003965AGGAMTSLNTMCKTHIPFVPAISEVGDDQFTFCTECEQNIERWYNDTDPERLPMWTDWKVSK

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