Scaffold Ga0315909_10005967

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10005967
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13858
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (29.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001807	Metagenome / Metatranscriptome	631	Y
F003601	Metagenome / Metatranscriptome	477	Y
F019817	Metagenome	227	Y
F027818	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000596714	F019817	N/A	MQATAVPNLSINQRNIYMYFLNHRKKYGKVPCFVPKCTTQVSRLDQYLQALNKLEQYGLIRVERCSNNYTGWIMTEPKSL
Ga0315909_1000596722	F001807	GAG	MTVLAIEDTQFTDTHVTVTAVVDEMRLLYHATHLDPEEWAPALCKTTVELDPEEPIPLDEDGFCAYLNQLDPQWQLVDKDDFDLD
Ga0315909_1000596724	F003601	AGGA	MSDYTDDQLLAMAMANIGEYITDNSPQYILIDEDPRNEDDYDTWDVGMEPIPGDQTWKSTAIDVESTEVK
Ga0315909_100059678	F027818	N/A	MFSNTIVGNICYMEKAIHEGREFLAISMVVNDMYEGTCRIKFNNANGLMTAYNNGTLVVGQQLILTQFDVRLSSIRTHYFKDGDLVALKYPEMALTRVRAVIGSAPRPKVQPEVTAPKVEPTLEEIPF