Scaffold Ga0315909_10005945

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10005945
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13880
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (91.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001715	Metagenome / Metatranscriptome	647	Y
F006894	Metagenome / Metatranscriptome	362	Y
F027781	Metagenome / Metatranscriptome	193	Y
F037595	Metagenome	167	Y
F060701	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000594512	F006894	AGGAG	MHWNYRIVNTKTENGGEDWFCLQEVYYDKENKPYAYCNPSTGSEDMESLKDVWHMINEAITLPPLQEEDFIGRMAL
Ga0315909_1000594514	F060701	AGGAG	MIVSFVTALPEKKANSSDWMQAMPRSVRKTLRLTKSRQCNVNTHDGVDDYLAVDCRIDTYHTQNLEFLDREYGFDEFGDIDDEHEGLTITEPMNEVEAFQYLTGYDIL
Ga0315909_1000594522	F001715	AGGAG	MDELVPHIEENIPLPQNAKDAFPELSPAEELQMRANVIKLMSDLTGQQISPTKDNAAQATELARQMAADPKHRPEFANYPNETLAFLAGMVAQMNVSIVEELSDFKLYVVNKLVFEIEHAKDAKARLTAIRNLGEVDGVDAFKKRTEVTHKILSAEEVEKELLETLQSLEGKVIDVEAREVIKNDAKTDA
Ga0315909_100059458	F027781	AGGAG	MELHKPDHLISLASSAVLVSVDVNVWSATKQDRIISNEVTASKNADKSAGRYVKNLLADHPRHKAIVNYRQTIYNWVKRRTYRWNNSQDLLPSVDMPKFKQEYHEHQRAFNTLLSDFILAYDSIVSDMAFKQGDMFDRNDYPAKEQLVSKFGVQLFVSEVPMSDFRCGIASDIAEDLFATYSQQAQEIVSHVMVEQQSRFIEVMKSISHCCGVDDVGIDDNTGETKTKKRKIYDTTILKAKEMCDTFKGFNLSGDPQLEEARASLERALSGVTAEDIRESDAVRHAVKEDIDDILGKFSSFKCV
Ga0315909_100059459	F037595	AGGAGG	MWRKKEIQMGYRSDVAYTIRFVDDHDTNNEQSFYTFLAEAKSNPKYALALKEVAIIEGRQEINFNAEDVKWYESYADVDSHMALVGLAEDWVRQVCEGTLHCRLGVIFMRVGEDTTDTEERANGDYEWSWIQISRQIITDWS