NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10005256

Scaffold Ga0315909_10005256


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10005256 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14941
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004050Metagenome / Metatranscriptome455Y
F007223Metagenome355Y
F013758Metagenome268Y
F031078Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1000525610F013758N/AMTAWTPEYLVKINGTVVTDVTLANLTITSGRTDIYSQPVAGYCQVQLINFNNQSYPFNVGTGLTVEVKNSSGTFIPIFGGYITDYGTSVNNAGALGSTTLLTIVALGALSKLPKFIDPGVLSKDYDGDQIYTLLSGYLLGQWNEVPAAQTWVTYNPTETWANAVNIGLGDIDRPGDYEMIARNASSTDIYSLVNQIATSALGYIYEDAQGRIGYADSTHRQDYLAANGYVELDAGHALASGISTTVKSGDIRNKYTIAYGANASSSYTAEDLQSQSLFGLQAQSFTSNIDKAVDAEAVADRYIALRSFPSAKFESITFPLGNPEIDDTDRDALINVFMGMPVWIQNLPNNINDGSFQGYIEGWTFRASFNDLSLTFNASPVNFSQVAVKWEQVNAAETWNTLSNTLTWIDAIGVVA
Ga0315909_1000525614F031078AGGTGGMEAIIYATLGLIAIPVIRTAIKSYRAKKAVADIVVDALEAAVDTVEKKK
Ga0315909_1000525616F004050GGAGMARKKVIDLDTYNALDAWAIALHEMYRALRRAGFAVDIALSIIQDRDAYPDWILPSIPDRVDRLPYEDDEDED
Ga0315909_1000525618F007223GGAGMFDPSLGDTLVMLLIGALYFHLGRSVGIRVGYLKGRKAVQSYYEKKERVKA
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