Basic Information | |
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Taxon OID | 3300031857 Open in IMG/M |
Scaffold ID | Ga0315909_10005055 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15296 |
Total Scaffold Genes | 32 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (59.38%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001120 | Metagenome / Metatranscriptome | 772 | Y |
F001165 | Metagenome / Metatranscriptome | 760 | Y |
F001807 | Metagenome / Metatranscriptome | 631 | Y |
F007026 | Metagenome | 359 | Y |
F030408 | Metagenome | 185 | Y |
F059883 | Metagenome | 133 | N |
Protein ID | Family | RBS | Sequence |
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Ga0315909_100050551 | F001807 | GAGG | MTVLAIEHTSFTDTHVTVTAVVDDMRLLYRATRFEPEEWAPALCTTTIELDPEEPIPLDEDGFCSYLDQLDPLWQLLDLTDEQ |
Ga0315909_1000505511 | F030408 | AGGAG | MFIALVTDRTGRYAHVWSEARTWAQFTDQLEDIGCEVIEDQTDDWEGSSKEEIAEDCLSVHQLLNDTDFIPH |
Ga0315909_100050554 | F001120 | GGA | MTKRSLISFDRTIHGVNITEHGIKSVSKSIKLGPFQITLNANPNGVKGSLSVPGTGVSIPNIKLI |
Ga0315909_100050555 | F001165 | N/A | MTNNTPRIPDSMDMQRLQAMQLVAKMKETSDRLGMGFIGGFIAPNGEKFVMTNMDDEDSQALLPDDLR |
Ga0315909_100050556 | F007026 | N/A | MFYPEINWKKNEYHHLQEVVDLLKAIQERESKRHQMDEHLTPHTADVVLEVIGMLEDEIDYDPSPQEGGEPPITLSEMHSAAWREHQAMHK |
Ga0315909_100050559 | F059883 | N/A | MTEDNQRYHLIINVDEKYAIVNALAFYHAHHIQGALMDEDEREQYMLAFQEDGPTFVDQLATKIANTF |
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