NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10005055

Scaffold Ga0315909_10005055


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10005055 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15296
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (59.38%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001165Metagenome / Metatranscriptome760Y
F001807Metagenome / Metatranscriptome631Y
F007026Metagenome359Y
F030408Metagenome185Y
F059883Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100050551F001807GAGGMTVLAIEHTSFTDTHVTVTAVVDDMRLLYRATRFEPEEWAPALCTTTIELDPEEPIPLDEDGFCSYLDQLDPLWQLLDLTDEQ
Ga0315909_1000505511F030408AGGAGMFIALVTDRTGRYAHVWSEARTWAQFTDQLEDIGCEVIEDQTDDWEGSSKEEIAEDCLSVHQLLNDTDFIPH
Ga0315909_100050554F001120GGAMTKRSLISFDRTIHGVNITEHGIKSVSKSIKLGPFQITLNANPNGVKGSLSVPGTGVSIPNIKLI
Ga0315909_100050555F001165N/AMTNNTPRIPDSMDMQRLQAMQLVAKMKETSDRLGMGFIGGFIAPNGEKFVMTNMDDEDSQALLPDDLR
Ga0315909_100050556F007026N/AMFYPEINWKKNEYHHLQEVVDLLKAIQERESKRHQMDEHLTPHTADVVLEVIGMLEDEIDYDPSPQEGGEPPITLSEMHSAAWREHQAMHK
Ga0315909_100050559F059883N/AMTEDNQRYHLIINVDEKYAIVNALAFYHAHHIQGALMDEDEREQYMLAFQEDGPTFVDQLATKIANTF
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Bioinformatics & Integrated Biology Lab
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