Scaffold Ga0315909_10004873

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10004873
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15663
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (16.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008751	Metagenome / Metatranscriptome	328	Y
F029027	Metagenome / Metatranscriptome	189	Y
F038121	Metagenome / Metatranscriptome	166	N
F045624	Metagenome	152	Y
F091302	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000487323	F029027	N/A	MNNPAFEYLRQFKKISDDAEALVTKFIKKKYPELGMKELVQIFENGIAGEYGKVYSADPETILDWIRKHVSNKGQQRSYYETPLLTKEVTIYDNRYPEKQEDWCKEVNKAFTAYLNGTSTTEMHPHIYDRLMVDSKIPLNAYLKHYTSDVTIAKQKILTEYFSACKQKGFTYIYFIKQ
Ga0315909_1000487324	F045624	N/A	MNAAERYRVFNEITNNSFVELSLTYARCYQENPKAFINSYKRYNSIRLVCDWIVYTYKYIGAFDECKALGKDFSDWANRQDVDEKHKTNLADIMLIIYSIINR
Ga0315909_1000487332	F038121	N/A	VKQVLRDREKLDEVAKYVVQMGYCANDTIIQTKSDTLITYDTIIEKGADIFRDIYHTDTLRLPLTKKIVKTITIRDTIKSVVVDNARIKLLEAKLAVQIEKTQEYKDKANSRLKWLILLLIAIAIRMLYKPLLKLIAWHS
Ga0315909_1000487334	F008751	N/A	MTQVMIFIAGQAILIIGGLIGIYVKVSLKLKELEIRVHVVEKQDDQISRKLDTITQQLNQLSIQLQNKQDRE
Ga0315909_100048734	F091302	GGA	MLVNVILLNYERKEHTQRVKYVNFSNAGFHFDFIEVEMKGISRAINYGISRSYQYDAIVTMANDILMPDDWLARMVEAAYAIPNTGMCGIHCVEGLGERSYISDIPIHKADAVFGNVLIPMKAIETIGKFNEVYDPYGMQDRDYSFRLQQTGHLNYYLSGLTAEHIGHDVGQDTPYRKMKDEGLMKCDKLWAQETGKYQSTNNYVIL