Scaffold Ga0315909_10004831

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10004831
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15722
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (43.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F030408	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000483113	F001165	N/A	MSLLNDAPKPRIPDAIDAQRLQAMQLVAKMKESADKYGVGFVGGFISPDGQKFMMTNMNEDDTNKLLPEDLK
Ga0315909_1000483115	F001120	N/A	MTNKSAFNFDRTIHGVNITENGIKSYTKSIQLGPFQLTLNARKSGLLGSISIPGTGLSKRNIKLF
Ga0315909_1000483117	F001807	GGA	MSVLAIEDTTIDGTYVTVTAVVDEMRLLYKATHLDPEEWVPALCTAYFQLDEEEQVPTDEDGFCSYLDSLDLNWQLVDISDWNLD
Ga0315909_100048315	F030408	GGAG	MRIALVADRTGRYAHVWGSPYSWNQFVNQLEDIGCEVIEEQTEDWDGYTNEEIQADCLSVHQLIHDSDFVPHN