NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10004831

Scaffold Ga0315909_10004831


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10004831 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15722
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (43.59%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001165Metagenome / Metatranscriptome760Y
F001807Metagenome / Metatranscriptome631Y
F030408Metagenome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1000483113F001165N/AMSLLNDAPKPRIPDAIDAQRLQAMQLVAKMKESADKYGVGFVGGFISPDGQKFMMTNMNEDDTNKLLPEDLK
Ga0315909_1000483115F001120N/AMTNKSAFNFDRTIHGVNITENGIKSYTKSIQLGPFQLTLNARKSGLLGSISIPGTGLSKRNIKLF
Ga0315909_1000483117F001807GGAMSVLAIEDTTIDGTYVTVTAVVDEMRLLYKATHLDPEEWVPALCTAYFQLDEEEQVPTDEDGFCSYLDSLDLNWQLVDISDWNLD
Ga0315909_100048315F030408GGAGMRIALVADRTGRYAHVWGSPYSWNQFVNQLEDIGCEVIEEQTEDWDGYTNEEIQADCLSVHQLIHDSDFVPHN

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