Scaffold Ga0315909

Basic Information
Taxon OID	3300031857 Open in IMG/M
Scaffold ID	Ga0315909_10003120 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031857 Open in IMG/M

Scaffold ID

Ga0315909_10003120 Open in IMG/M

Source Dataset Name

Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20501
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (14.63%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

20501

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (14.63%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.7464	Long. (^o)	-83.3444	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Lake Erie, Ohio

Coordinates

Lat. (^o)

41.7464

Long. (^o)

-83.3444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F039943	Metagenome / Metatranscriptome	162	Y
F065418	Metagenome	127	N
F070857	Metagenome	122	Y
F076869	Metagenome / Metatranscriptome	117	N
F098653	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000312010	F070857	AGAAG	MKVICIDNSKKPKNIPIEEWVKEGDTYTVTRIVRMGLQKETYGFLLKEVQLSSRSFPYELYDASRFLPIELLSNMKEEKKEEVIIEEACLELI
Ga0315909_1000312019	F000716	AGGGGG	MSLSILFKINIYIMEKLKQSIKEYQTSSKTYIKYDTDGYNQYQNYLYKRALHGLSAMTEKEIATMCSKKKQRIINVYKRAQVVINKLKQQATISYSNFLFKSLFPNSPITEFLLTETETDVSIINTLNFKDLNINKSDIITIFIQEGILPKNFLSLEGPQVNIIQLPRLKNE
Ga0315909_1000312022	F098653	N/A	MCNTITSVLGFDLDAEITDNEGNVIASGTTCNYIPENKPDYVFNVDYYNKWTNFNEGLLNKIRDYRKYNL
Ga0315909_1000312026	F076869	N/A	MITLFMITEITKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYSAEKLVSA
Ga0315909_100031206	F039943	N/A	MKEISKDSSLNEHRQEKEYGWKPIPSKKKSVRKKSEYNYAFVGIIIGLTMGILTSIFMYKDSQRCNLLLEENKLLKEMLYYKEINK
Ga0315909_100031208	F065418	N/A	MEYTVNDILKECDALVYEFQNSPKKRLRPMLDKRNYLIAILYYKFGYTEEKISTIYNIKRVSVSVSKKHAYSLLEYGDNVFKENIKDYLIKYPYDFPNFSNKYKKDIGITIYFDNKTLEKIRAYRDIINEKSTAKTIKRLVTNGLKLWGK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315909_10003120

Overview

Ecosystem & Geography

Associated Families

Sequences