Scaffold Ga0315909_10002146

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10002146
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25725
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (86.84%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003539	Metagenome / Metatranscriptome	480	Y
F003658	Metagenome	474	Y
F031484	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000214626	F003539	GGAG	VNYLEEYSEMVQQLSAEYHKRYGMLERDDIRQELWLWFVAHPRKFQEWDKLEQKDKDKLIAKSLRNAALKYCEKEKARKSGYDSSDLYYYDATVVEAFLPSIIAGTYSIPVSIQDLNAKFGTGNDAEGNNWLALRSDISHAFEKLSEAKQNVLRLRFSIDSPDWALLAKDMDSTPDGARMKVQRAISSLIKNLGGWRPYHEDDVVKEEEHAV
Ga0315909_1000214627	F003658	AGAAG	MQSKVDLRGEPTFACICGCMMFRITVMWDEDTRAVGWYDLAQECIECGTITTAPTEIDGC
Ga0315909_1000214632	F031484	AGGAG	MDTKKLVAIATTYARAAVPSVVALYAAGVTDPKTLAYAFASAFIAPLWKALDPKAKEFGIGSKK