Basic Information | |
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Taxon OID | 3300031857 Open in IMG/M |
Scaffold ID | Ga0315909_10002105 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 26000 |
Total Scaffold Genes | 37 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (75.68%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F010302 | Metagenome / Metatranscriptome | 305 | N |
F024955 | Metagenome | 203 | Y |
F038086 | Metagenome | 166 | N |
F074801 | Metagenome / Metatranscriptome | 119 | N |
Protein ID | Family | RBS | Sequence |
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Ga0315909_1000210513 | F038086 | AGGAG | MATTTISNISNPVSIQDIKPIKTLSNIKPFNSTASNAALGAVLAIATLTNTVAVSDLKPIPSNFQKVDYAKVITPSSFLPFRLTITNIGIEGYDPANPPGIGIQIIGFSNYIL |
Ga0315909_1000210520 | F024955 | GAGG | MAVENIGNLVPTKIPALIDDANIQDALKAYHYGSYDFDTAEDDPENLLNPSIAYTINNLQDQIDTKAALEVAARDISRATTTAPTAAAFTAFSNTIPNGYIWLDKDSSAGVGYFAATSVYTTTAPSTNLANGLIWIKKGSSPIEMYVYNGDTSTFDQVV |
Ga0315909_1000210521 | F010302 | AGCAG | MVDVLLNTDDVVVIGPPESIDLLVDIGPQGVRGSKFIVGSGEPNALTASGVLFGNTLILNDMYINTAPGENYGYMYQYISQAGANTWVQVLKVSPAIYSSVETIAFTSGAGSITIPISNIVTVSGSPLTASNFNVQFRIEGANPIASAMEIPALAGAGTNLVINFDAVQYSGGSWSALTGSKTVHLFISIV |
Ga0315909_1000210532 | F074801 | N/A | LYIKYTALVYNLSMSFLENLEESLFPEEAGNGEIIQDELPIELEERLSIEQIEKYNERLKYMEENGI |
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