Scaffold Ga0315909_10002105

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10002105
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26000
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (75.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010302	Metagenome / Metatranscriptome	305	N
F024955	Metagenome	203	Y
F038086	Metagenome	166	N
F074801	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000210513	F038086	AGGAG	MATTTISNISNPVSIQDIKPIKTLSNIKPFNSTASNAALGAVLAIATLTNTVAVSDLKPIPSNFQKVDYAKVITPSSFLPFRLTITNIGIEGYDPANPPGIGIQIIGFSNYIL
Ga0315909_1000210520	F024955	GAGG	MAVENIGNLVPTKIPALIDDANIQDALKAYHYGSYDFDTAEDDPENLLNPSIAYTINNLQDQIDTKAALEVAARDISRATTTAPTAAAFTAFSNTIPNGYIWLDKDSSAGVGYFAATSVYTTTAPSTNLANGLIWIKKGSSPIEMYVYNGDTSTFDQVV
Ga0315909_1000210521	F010302	AGCAG	MVDVLLNTDDVVVIGPPESIDLLVDIGPQGVRGSKFIVGSGEPNALTASGVLFGNTLILNDMYINTAPGENYGYMYQYISQAGANTWVQVLKVSPAIYSSVETIAFTSGAGSITIPISNIVTVSGSPLTASNFNVQFRIEGANPIASAMEIPALAGAGTNLVINFDAVQYSGGSWSALTGSKTVHLFISIV
Ga0315909_1000210532	F074801	N/A	LYIKYTALVYNLSMSFLENLEESLFPEEAGNGEIIQDELPIELEERLSIEQIEKYNERLKYMEENGI