Scaffold Ga0315909_10001807

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10001807
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28265
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (89.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F000649	Metagenome / Metatranscriptome	960	Y
F007518	Metagenome	349	Y
F072096	Metagenome	121	Y
F104706	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000180725	F104706	N/A	MGRPSKPDTRYFQRTLSAPERMILLSAGNGNLCRGFENVLDLYHYAHNQGFRPDMDMSILKIDRGITNSPNEDCL
Ga0315909_1000180731	F072096	GGAG	MYKQDIQNLAENALHEACRHIQDVLGVKTGDNAAYFFSGEAEDTIYRIFRNYIQDELSIQEYKTEDN
Ga0315909_1000180750	F007518	GGAG	MTDWTKEEDEAFNMVEKQSNLGKQILRDMDGQPYYFDIYVSPSQRNVVLEEVALEFDKMPFGDTSQSFAQFVRNMKGKL
Ga0315909_1000180754	F000166	GGA	MPNIPNQQDAELFAQSVKKWQQMLSLGDWRIEKGSKPAKAAMASVEFNASARLATYRLGDFGAEKITPESLDKTALHELLHVFLHDLMTVAQDPKSSQDEVEMQEHRVINLLEKLLSKDSHGIK
Ga0315909_100018078	F000649	N/A	MSKTATHYLPDGKVYKGPVHKDGGVLMTGAKHTSNSKTLTHTPPKKVKK