Scaffold Ga0315909_10001727

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10001727
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29047
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (32.69%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042335	Metagenome	158	N
F068824	Metagenome / Metatranscriptome	124	N
F080908	Metagenome	114	N
F084229	Metagenome / Metatranscriptome	112	N
F097332	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000172731	F097332	N/A	MTREYAQRKSNEDYAYGRITKEEWDFQFEELGNVRIWSKDGKIHQLKEEHERLRPDNGTT
Ga0315909_1000172732	F084229	GGA	MIEPNIAQKAISFVKSAAAFVRAGMPIRNKEQIEERLMICNQCVHYDPTAFSGAGKCGVCGCNMEVKLVMDTERCPLDHWT
Ga0315909_1000172743	F068824	N/A	MNWTTEQLKEKGYSLAPDGHYYYADHYKPPSRRLLDTLTQHAPKRSLVKIPKTKEPSKDCTAKCNPQYTLAITRFSTKTLDVDNLAGGCKPLIDQIRYAHLIPDDNPESVNITFSQVKVKTQAEQRTEVRITKA
Ga0315909_1000172746	F080908	AGGA	MSEPHYATEIERLKECDKDYRSIAAQLAVYCSAAIFALRATNKDLEDAQVKAEIIPNPFAEQAIDDMFSQYLESLRDYPEIMAIALKFIQQSR
Ga0315909_100017278	F042335	N/A	MNDNATSHGLMGTVISTTGFIVSMLPEIEASIRMTGGLISIIAGILTCIYMVKQISK