Scaffold Ga0315909_10001599

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10001599
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30530
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (84.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005703	Metagenome / Metatranscriptome	392	Y
F065560	Metagenome	127	Y
F086806	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000159917	F086806	AGGAG	MSMQAELKELVTRIAPSKDIAGGFMSRNDIIQLINKVADEAVLIGWARAETLSRQRLDKKITSLEQEIEILKDRIKDLELEVIASTK
Ga0315909_1000159920	F065560	AGGAG	MIKEPEDEAFNDIERQSLWRKQAVLQAIRNENERLEMYSDLNPYRSQVIEEVAQAILKMEGFGKDTLHSFAIYIRGLK
Ga0315909_1000159926	F005703	GGAG	MGWVFCCFLIACLLPLGAMLYLDILEAKHEVKQEVEKVQKLRRQIEQEKRKNDKT