Scaffold Ga0315909_10001587

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10001587
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30617
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (21.95%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005050	Metagenome / Metatranscriptome	413	Y
F008936	Metagenome	325	Y
F024730	Metagenome / Metatranscriptome	204	Y
F028725	Metagenome	190	Y
F030677	Metagenome	184	Y
F061575	Metagenome	131	Y
F080936	Metagenome	114	Y
F094990	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000158714	F030677	N/A	MPTPAQIQKNLDELYNDWTSKFTALYGPVRELKRIMFKRIFGTGSSRGSNSAGEKLPTKPYSTTPIYVSPRSLTNAPAKFKFGKPPEGESKGKPIKSLYFPDGYAQLKRETSRKLPLELTGKLKGGFLSEDVITEGLEASIAVPASEEGKVEGLEKKYGPIFVPTAEEQAEMLEDHAQQLVEQIINAMNKR
Ga0315909_1000158715	F024730	N/A	MCIESLLGLRDCAGAEPSTGLYIDDLGINQTFLGQLITDQYHNGVELFEDKRAFAWRKISSDVLTKLSPMMKSDTIIESKRVGQVVSNYSNVQTALGAGNYGGIRLKIDPNTVAYLNFYLADINLAIAATNTNVPVLIFDMTTGKLIETITYAEGALDQFIGKTFTSAKRKLDIAIVYESTMNTAKFTPKKGVCTSCGGGPKEAHMCPFVDAIGIELTTDGTNVLTSTSSKYTTGMSITYNVNCDRQGWLCSVGGTMALSLAYATAVEIYNYALTISPNQRVNTAVVVNRGQNKTELMEGIMAARDIAATRYGEELGAILQNMRLPDDNHCWDCKRNMKYVTALP
Ga0315909_100015872	F094990	N/A	MNSIAKITIPIEKLYQTINSAEVLSAQQTIHNASAITNSAEYSAAASAIAQVNQAVKAIENARKTVTTPLDSYKKELMRIESDATAPLVQFIADTKAAMLRYSEEAERKLIAEQAQAPTLQDLVDVTIKQEHIKGIRTIRRAQINGEVDWLKVLSVLFGSGLYRPEDFTRNLLKAMEICKVDSIAGIEIFEEKIQTITR
Ga0315909_1000158720	F008936	AGGA	MASFEQLVKKKIALFESVPKELETAAIKTQAEVWRKIRPILDEMDTDAAGNIEQTEGNIRRIGVIAEELKKVLAGAEYKEAVRAFLGSIDEGVQLTNEIAQTFEEGFEPEQVQRQLLQISKQNAINAFYGSGLDARFTQPFLEQLTANVAARAPLREAVNALEGLVTGTDKLDGKILANIKTTATTAQAVADRSYSAAVNETLDIQWYEYLGGEIPTTRPFCEHREGKIFHKKEIEAWGDGQNSAGIRDIQDGTWAGRIDGTDSKSIFTFVGGWNCRHYLVPVPDRKVPDTVKARARAEGYID
Ga0315909_1000158725	F005050	N/A	MACVSYCDSSLLDHNLVNCNEYKLGGVSAILVGACGTELVDPSDSVEVDALITAGTAKLIEDIRFALPAGSPVTVDSPIGCGTPIRINEDRTATLFDANVTDENNTFWNDVNNRRIAWVLAYMCDSGKVIYINPPVGITTSANFILPEQNNELQRYEVTFSWRDKNIPAQYDAPAGIFG
Ga0315909_1000158730	F028725	GAGG	MVELFKHEGHTYYRFPKELNLPLERFSMSMALMERISSGLSGAEMERILAGMEKALSAGLSNPKNAAVVAGYIHVIRERQDTVIHRDLLLNLAATWVVRGDEDPAVVDPTIHQQKLELFEGMCKEASHDFFTRLDIAPLMPLLTMSPKDFQILWEYNVEEQRKLTQALKHLTTHLDTGRK
Ga0315909_1000158732	F061575	N/A	MSVCTPCFDSGISVAACHAGISFGLVTPETEYTVTITHNATKRVQTFTATSDIDGIITIQGAKVDALQGYTIGLNCDQFSICDVLYDCISFSVVNMDVDEPQTINLLECLEC
Ga0315909_100015875	F080936	N/A	MLMLIKTCGSLATIEGELAYADSLNSEFTSRIKDDSSTIHSQAVQLVSAGTKLKALELREPEVLVRYKTKTVIKTEVELGETVYIDSFPHLRLPRTFHRPGKWLEIGGQISRAGRLQIDSIIIPVSYTVAIGDTLRKGFLWRKRDKVVRLGIDNPYVHVTGMNNVIVADRPKKWYETQLAGAVFGGLIGFGLGSAQN