Scaffold Ga0315909_10001448

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10001448
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32169
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (5.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032099	Metagenome / Metatranscriptome	181	Y
F036705	Metagenome / Metatranscriptome	169	Y
F075717	Metagenome	118	Y
F095465	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000144817	F032099	N/A	MGFEKGHKLSKGRPPKVEEEKVNNIFIKALGELYNKETEDETKIAFVKDTLMQSQRGQLFIAEHIFGKPKDIIEATHNVNDFNIKDIFKIGNKTE
Ga0315909_1000144824	F075717	AGGAG	MNDKATEHYNITLYEIEQGTSIAHLRLILKEYEAEELYEECQGIHLALEIISFNTLTQLIKESKKQKIKIRWKRK
Ga0315909_1000144838	F095465	N/A	MKDTMKHHIEELQISASRMLVLNSDNSMLISYFKDLKNKLEYLYELNEMDNQANWTEIQNAFNSILKIDTELTEVDLKIKVKEAPIPKVGIVTIKMY
Ga0315909_1000144845	F036705	N/A	MKDLLDYNRFRIETMQNKICELESLLSTLETYCFELADDDCPKEYKTIIKKELYNLKTK