Scaffold Ga0315909_10001436

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10001436
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32339
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (8.70%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F044325	Metagenome	154	Y
F049410	Metagenome	146	N
F062749	Metagenome	130	Y
F068425	Metagenome	124	Y
F071219	Metagenome	122	N
F102493	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000143629	F044325	N/A	MKALIQKLLFGYRPNPNAIEPKRGSILKYKGHNAEAIHSALVLLKFNLENAKN
Ga0315909_1000143631	F102493	N/A	METTLTLHWEYEETDRENNITGGWVLTDITNGNTPVYLSPKLEQLLNEELDPENF
Ga0315909_1000143632	F062749	N/A	MKTKASLILWAVSALFMSFWAVKFAMTGVFFGNSELLTFSISFCASLTSAVCGAGFMQQWLKK
Ga0315909_1000143633	F041191	N/A	MKLLWKPTKLTCEFIISDFAKSEGVQKVIGFSRGWHHWNSIRLGIRKEEDYCVLYFYAYIKGQRIIQRLGRYSIDELVKVRLHWGHYIECKANNGYAFRVAPKCSFPIGYLLYPYAEKDGVEGIEVPIDIEIINLKIN
Ga0315909_1000143636	F049410	GGA	MTRGTRYTNGKEVITFVKIDFIVIGGRKIDHVYFRRKDKHDLIMPLVEWNLKGKFEWEII
Ga0315909_1000143639	F068425	N/A	MVMGAKTNNMKPHHQLITFAVLCLLLIIGLNHCAKEKPKVIPFDYKAEAEMMKKQFGIEQAILLNQLEAATRRLQVANNAKDSIRKREISLSNTNIALMKKLRNTLPKECDTVFVLCDEIINVKDSSYAALFNAFQLCADGSSIKDSLITTYKAENVTDSTLLVISKQETKQQRKGKVAAWCVAGAMFLVWLVVGLK
Ga0315909_1000143642	F071219	N/A	MIHSQHPDNSILVIITSVIIQAGVWTSDWFGNMNLVGIYDTIYDGAKLGALLVSMWASYRVAKKNKND