NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10001173

Scaffold Ga0315909_10001173


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10001173 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35495
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (74.55%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001182Metagenome755Y
F001424Metagenome / Metatranscriptome698Y
F003662Metagenome / Metatranscriptome474Y
F007360Metagenome / Metatranscriptome352N
F056570Metagenome137Y
F064494Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100011731F064494N/AFTSEKAMTKDEIFKLIEDNGLSLHGDIEHFAALVADRVYAQYLEQPTPSQAGVISITVPEPVAYLCENAAGHRYFRWKKPSGIYKPIALYTKEQA
Ga0315909_1000117319F056570GGAMKITTYQENARMLWEAHRVIHQQNMQRLAELNRQAEYHQKCQEIKAQWIKAGQVDVMA
Ga0315909_100011732F001182AGGAGMKYPSTPNCPRDLFEFKCIIEDVELTCFLEYSPAETGSTDSLGAPYEPDLEESMTLNNAYIFGTDVDIAHLLLQSLVDHIEVSALEKFNDR
Ga0315909_1000117343F003662N/AMKTKQATVVLDDREWIVLDTDEVKDKKVFCTLMSPDGHITWHTWVDINKIVGVI
Ga0315909_1000117346F001424AGGAMHSLSTVKEFVEDERVFCHECKHCSAVDQRKSMPAELMEKVRKVNAKPLQWMFDQAKIRNGWATVTWTEHQCGPTGFAVFPKDVKHRCHMFQAKPSAVESEGWWLT
Ga0315909_100011739F007360N/AMPNTPTPEPQRYADAQLMALLDPSSKRDTILITPGSPMPSRIPEGLTVARTSRGIVITSDPAKVKVIDQGSERDVGMALFGYAHDQSKGFDNVAVAMDRRGTPVAELAIKPGQERRAMRAASLLAPSTGSTNMMSRGDVVSTRLKGLLE
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