Scaffold Ga0315909_10000888

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10000888
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39940
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (21.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004953	Metagenome / Metatranscriptome	417	Y
F012010	Metagenome / Metatranscriptome	284	Y
F071153	Metagenome / Metatranscriptome	122	Y
F074450	Metagenome / Metatranscriptome	119	Y
F083779	Metagenome / Metatranscriptome	112	Y
F091487	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000088814	F071153	N/A	MFSGKLVKKDGKLTYATPQDKLAYDIFISKLEEGQSVEMYIDLASTDHSKAQLAKVHACIREMAKESGYTFDEMKCLVKDHAGLAYKDGLMINYKSFGDCSKDELMLAIEACIQIGREQFNLNLG
Ga0315909_1000088817	F012010	N/A	MTDIFTRLIQEGLTPNTYYVLHCIKEKIVPNKFVNKELECKRLQTDQWLTENLELTSKSLIFMEEINGYFKRTKKKTSQDLMGQDFVRNIEKYVEIFPNKKLSSGKYARVNAKNLEAPFRWFFENYDYDWEEIMKATEKYVDEFSIRRYEFMRTAQYFIRKQNIDKSFESDLATYCEIIRSGDDEEQVYFSERVV
Ga0315909_1000088829	F083779	N/A	MAKMIFDKEETRNLLMMLQSEDADNHLIAFESLKNVDFKKYIGELLVLYKFSGHSMSNWLTNCNKIAMRFQNTFANEVPLISSPKTLSLITQHKGSKASVELFMEFFIRDMSRMLESIGYPTDKFEINIKFKDDGQTTES
Ga0315909_1000088835	F004953	N/A	MMLVQSTWNDKQTFRMIPITESCPYVECIFDPDTKVFVVISKIRKVSLHMLPKVDDYGQPKTGTKGMLQERHKIEVFQEFYLEDKNAIEELIKLFAVNSKFNYKKFMAEQA
Ga0315909_1000088839	F091487	AGG	MVQTLINLLNLTQMHPVTFRKAMIEAYMAGAEAMASGDIDEPNKKDARDWFDNEYGQQESEECDCCEEE
Ga0315909_100008884	F074450	N/A	MEDYTKDDVVQALLKIPNDSRKRVLVDQRSYLVGLLAFRFMLSEHTIAKLVGFKRDKINHNKRLVLQFRKDKSYQENVYVYAQIFPFDFNSVNTNELIIHRSNRVELDLDRKVYRKLKAIGAIMNHKDVRTTIKLFIDKGLKLWEE